rs51043325 SNP Detail

Summary

• ID
  rs51043325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43871154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATACACAG CTCAGTGATG
  AAGAGCTTAT AATTGGCATG TGTGAAGCTC TGGGCTCACA TCCTGCAGTG CTGGGCTGGG
  GTGGGGTGGT CCTGGAGTAA GGGAGGTTTG TCCCAAGAAC CTTTCCTGGT GCCCCATGAG
  CTCAAAGCTA TGCTCATAGT AACAAGAGGT TATCTGCCCT TTCTGAGTGA GTATGGGGTC
  Y
  ACAGCACGCC ATTGCTCTGA AGTATTCACA CGTGTTTTCT GGGGGGCTGA GTTCCCACAT
  GAAATTCTAA TATAGATGTG CTGCACAATT AAACAAAAGT TCTTCGGAGA TCTCAATATT
  CAAAGGTAAA TGGGTCTTCA CAAACCCACT GGATGGAGCT CGAGGGCTCT TATGGAAGAT
  ATGGGGAAAG GATCGAAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52253976	NES15255766	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51043325					SNP	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52253976	NES15255766	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43871154 () rs orientation: forward

Symbol	Name	Function Class
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
Rr384605	regulatory region 384605	132 bp upstream
Rr430903	regulatory region 430903	888 bp proximal
Tssr97483	transcription start site region 97483	1179 bp downstream