rs51043647 SNP Detail

Summary

• ID
  rs51043647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:59292713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTATATT TTTACTTATG
  CACATTTACA TGCATAAAAA TCTTTGAACA TGTTTAGTTG AAATTGAAGC AACCAAATTT
  CATAACTAGG ACAACTGATT TTCCTTTCTT TACATTTTTT ACCATTAAGT TTTTTGATTT
  TCCTTTCTCC AAACATCTTA CAGTTAAGTT CTGGAGGCAC CCAAAGGTAG TGATGTCAAC
  Y
  CACTAATGAG AGCTCTGGTG TTCCCTGGTA CATGAATCAC GTAAGGCGCT GAGTTCTGAG
  AACTAGGTAC GAAAGAGTCC TAACATGAAC ACAAATGTCA CCATCCCCTT TGACCCATAG
  TAGACCAAAT GTAACTACAT GGATGAAGTT AATTCTTGAC AAGTAGAAAA GTCGACCCCA
  TTTATACTAA ATTGCTACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62815997	NES17358090	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51043647					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62815997	NES17358090	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:59292713 () rs orientation: forward

Symbol	Name	Function Class
Pdzph1	PDZ and pleckstrin homology domains 1	within coordinates
Rr392790	regulatory region 392790	within coordinates