rs51044100 SNP Detail

Summary

• ID
  rs51044100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127400017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTGGTCC ACCAGTCCAG
  GACACAACCT CCTCCAGTGG CCAGTTTGTG CGCCCTGGGA CTTACTACAG GTAGGCAGAG
  CTGATACTGA GGCCCAGCTG GCCTGCCTTT TAGCCTGCGC CCTTCCAACC TCCCTATTCA
  ACTCCTTGCT TTCTCTGCCT GTCCTTTAGT AATCTAGTCT TTTTTTTTTT TTTTTTTTTT
  Y
  CCCCCACCCG CCTCAATCCC TCCCATTCTG CATCCAATTC TAGTGACTCA GCAGTTAGGG
  TCAGAGGGCA GGGAGCCTTA GTGCTACAGG CACAGAAAAC TGCAACCCAC CCCTGCTACT
  CAGCCTCTCC ACCCACACTG CTCCCACCTA ATGATCCCTT CTATGAAGAA CACATGGTTG
  GAGCAGGTGC TACCAGGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145882800	ENSMUSSNP2065810	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51044100					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127400017 () rs orientation: forward

Symbol	Name	Function Class
9430064I24Rik	RIKEN cDNA 9430064I24 gene	within coordinates
Cpgi19768	CpG island 19768	1564 bp distal
Cpgi19769	CpG island 19769	1570 bp proximal
Gm49388	predicted gene, 49388	within coordinates
Hsd3b7	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	within coordinates
Rr655897	regulatory region 655897	within coordinates
Rr655898	regulatory region 655898	320 bp distal
Rr655899	regulatory region 655899	1399 bp proximal
Setd1a	SET domain containing 1A	723 bp downstream
Tssr69292	transcription start site region 69292	230 bp downstream
Tssr69293	transcription start site region 69293	149 bp downstream
Tssr69294	transcription start site region 69294	126 bp downstream
Tssr69295	transcription start site region 69295	within coordinates