rs51047875 SNP Detail

Summary

• ID
  rs51047875
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115929704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAGTTTG ATTGAGAAAA
  TAAATAGTGG AAGACCAAAT CATGACTCAA GGACACTTAG CTGTCAGTAC ACTGTCTGCA
  CGTATTTGGA AGACTCCTCA TGTGTGCTCA GAGACAGCAG CATCCATTTC TTCCAAGAGC
  GCTGAGTGGA TCTCACAGAG TCCTTATTTA TGATGAGGCT GTGAACACCA CCCCTGGATC
  M
  CACAGGGTTC ACTCACTATC CCAAGAGGCT GCTCGTGGGA CGATGGTTCC TTTCTCGCAG
  ACTCCATTTT AACAGGAGAG GGTGGACCTT ATGAAGCATG TCTGTTTTGA CCATGTATCT
  TTTGGCTCTG TTCCTATTCT CTATCCCCTG TGCTTGTCAC TGTGGTGGTT TGAATTAAAA
  TGGCCTCCAT AGTCCCATAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60827749	NES16023058	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51047875					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60827749	NES16023058	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115929704 () rs orientation: forward

Symbol	Name	Function Class
Rr618351	regulatory region 618351	801 bp distal
Rr618352	regulatory region 618352	1013 bp distal