rs51049002 SNP Detail

Summary

• ID
  rs51049002
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51371908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGAGGATA ACCCTAAATG GAGAGGTCCA CACAGACATC
  TAATGAACTA GTGCACATAG GCAGAAAATA CAGCAGATAC GTTCCTCAGA CATGAAAATG
  K
  GAATCAGTGT GACAATAAAA GGCTGGAACT ATGAGAAGGA AGCTTCCAGA CTCCCCAAGT
  TCTACAGGCC ACAGCAGAAA TGATATAATG TGATAAAGTT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52288554	NES15304616	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51049002					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52288554	NES15304616	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51371908 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93275	transcription start site region 93275	1961 bp downstream
Tssr93276	transcription start site region 93276	1907 bp downstream
Tssr93277	transcription start site region 93277	1859 bp downstream
Tssr93278	transcription start site region 93278	1823 bp downstream
Tssr93279	transcription start site region 93279	1667 bp downstream
Tssr93280	transcription start site region 93280	1220 bp downstream
Tssr93281	transcription start site region 93281	1172 bp downstream
Tssr93282	transcription start site region 93282	1154 bp downstream
Tssr93283	transcription start site region 93283	1064 bp downstream
Tssr93284	transcription start site region 93284	696 bp downstream
Tssr93285	transcription start site region 93285	512 bp downstream
Tssr93286	transcription start site region 93286	409 bp downstream
Tssr93287	transcription start site region 93287	25 bp downstream
Tssr93288	transcription start site region 93288	205 bp upstream
Tssr93289	transcription start site region 93289	273 bp upstream
Tssr97556	transcription start site region 97556	1301 bp upstream
Tssr97557	transcription start site region 97557	964 bp upstream
Tssr97558	transcription start site region 97558	209 bp downstream
Tssr97559	transcription start site region 97559	679 bp downstream
Tssr97560	transcription start site region 97560	775 bp downstream