rs51049156 SNP Detail

Summary

• ID
  rs51049156
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84769994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCACCGCTT CATCCAGCTC GCTGGCCAGG TGGTCTGTAT
  TGGCTTCTCC ATCAGCGAAG AAGTCCCCTG CAAAAGCAAA GAGGAAGAAT CAGGGCTTAG
  M
  CCACTTACAT CTCCAGTCTG GAGGATCAAG GTTGCGGTTC TGAGTTTGAT TTCATCCCCT
  CGAGGGTTCA AATGCTGGCT CTGTTGTCAG TTTCAGTGCT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60642717	NES16273276	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51049156					SNP	A	A	A	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60642717	NES16273276	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84769994 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20671	CpG island 20671	671 bp distal
Cpgi20672	CpG island 20672	1383 bp proximal
Il27ra	interleukin 27 receptor, alpha	776 bp upstream
Rln3	relaxin 3	within coordinates
Rr178108	regulatory region 178108	807 bp proximal
Rr186973	regulatory region 186973	193 bp distal
Rr186974	regulatory region 186974	1206 bp proximal
Tssr82060	transcription start site region 82060	766 bp upstream
Tssr82061	transcription start site region 82061	1617 bp downstream