rs51050616 SNP Detail

Summary

• ID
  rs51050616
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185318516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACAGCAT GATGGTACTT
  GCTGTGTGTT CCAAAGGTAA AAGTACTGTT GAGCCTCATT CCCCAAAGCT GCAAGCTTGG
  TCTTACCTGT CTCATGGCAG CCCAAGCTAT GACATGGCAC GTCTCAGGAA TGTGTATCAT
  CTGAATCGGC TGAGTTCAGA CTGCCTTCCT GTCCCACATT TTTCTGTGTC TGTTGCTCCC
  M
  ACTATTTCGC ACTTCCTGTT GCTCCTCCTC CTACTTGCTG AGTGACCACA CACTGCTTCC
  CATGGTCTGT ATCAACAACT AGAGTCTGTT GGTCTTTCCG AGGTGCTGTC TGTGAGCATG
  TCCCCTTAGC CATCCACCTC TGTGAGAACC TGCTTTCTGG TCTGATTTGA CTCTTAGCGA
  AGCTAAATGT TCACGCACCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146436949	ENSMUSSNP6065940	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320177543	CHEV_1_187410198	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51050616					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185318516 () rs orientation: forward

Symbol	Name	Function Class
Rr425414	regulatory region 425414	930 bp distal
Rr425415	regulatory region 425415	1327 bp proximal