rs51051102 SNP Detail

Summary

• ID
  rs51051102
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146156075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAAATGG TGTAGAGTGA
  TGTAGAGTGA TGGAGAGAAT AAAAGTGGTA GAGTTACCTG CGAGTTACCC GGGTCAAGAC
  TGTTTACCTA GCCCTTCCTA GCACTGGAGT GTAAGGAAGA CCCCTGTCAC ATCTTACATT
  TACTCATAGG TAGTGCCCCC AGCAGCCGGG GTGGGATCCC AGTCAATTGG CTGCAAGTCC
  M
  ACTTCTCCAC AAAGTCCAGC ATCAGCCCCG CCTTCTAGGG CCCACCTACC AAGCAGCAGG
  CTGGGTCGCT CTCCGTTTAG CATCAGGCCA CGCCCCTCAG CAGAGACTCC GCCCCGCCTG
  CCCATAGGAC ATCAGGGCCC GCCCTTCAAG AGGCGTCATT CCCGCAGCCT CCACCCCAGG
  CATGGCGCTG TGTGGCCTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136044564	ENSMUSSNP4041448	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51051102					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146156075 () rs orientation: forward

Symbol	Name	Function Class
Ctbs	chitobiase	129 bp upstream
Rr398117	regulatory region 398117	within coordinates
Rr587029	regulatory region 587029	within coordinates
Rr587030	regulatory region 587030	1132 bp proximal
Tssr32348	transcription start site region 32348	147 bp upstream
Tssr32349	transcription start site region 32349	198 bp upstream
Tssr32350	transcription start site region 32350	1303 bp upstream