rs51054090 SNP Detail

Summary

• ID
  rs51054090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86056669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTA AAAGCAAATT CATAATTATA
  R
  TTGGATACTT GGCAAGGATG AAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133354681	ENSMUSSNP5308215	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321845694	CHEV_6_86029681	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51054090					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86056669 () rs orientation: forward

Symbol	Name	Function Class
Add2	adducin 2	Intron
Rr633329	regulatory region 633329	1593 bp distal
Rr633330	regulatory region 633330	380 bp distal
Rr633331	regulatory region 633331	16 bp distal
Tssr57448	transcription start site region 57448	1624 bp downstream
Tssr57449	transcription start site region 57449	1598 bp downstream