rs51054493 SNP Detail

Summary

• ID
  rs51054493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTGTGCT CATTATTATT
  ATTATTGTTA TTATTATTAT TATTATTATT ATTATTATTA TTATTATTAT TATTATTATT
  ATTTTCGAGA CAGGGTTTCT CTGTGAAGTC CTGGCTGTCC TGGAACTCAC TCTGTAGACC
  GGGCTGGCCT CGAACTCAGA AATCTGCCTG CCTCTGCCTC CCGAGTGCTG GGATAAAAGG
  Y
  GTGCGCCACC AACGCCCGGC TACCTCATTA TTTTTTAATG TATAAATGAG CTTGAAAGTG
  TGTGTGGGGT GGTGCAGTGA CTCATTCTCT CCACTAGGGT TCAGTCAGGC CCAGCCTTTT
  CAGCCCCGTA ACTGTAGAGA TGCAGGTTAA CTTTTTTTTT CCCCTTCTAA TTACAAAACT
  ACTTTTAATA CTTTGAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147738293	ENSMUSSNP898329	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51054493					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	817 bp distal
Cpgi2388	CpG island 2388	208 bp proximal
Rr402345	regulatory region 402345	860 bp downstream
Rr402346	regulatory region 402346	within coordinates
Spryd4	SPRY domain containing 4	1077 bp upstream
Tssr99849	transcription start site region 99849	1096 bp upstream
Tssr99850	transcription start site region 99850	1048 bp upstream