rs51055109 SNP Detail

Summary

• ID
  rs51055109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37089077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGAATTTA CAAGGATTGA TTTGATTACC
  GGAGCTTTAA TTTCTCACAG AGGCTAACGA GGAGGCCGAG GAGCCTGGCT GGGCACTATG
  GGAAGATGGA AAAGCAAGAG AGTTGGGCTT CTATGCGATT CAGTGATGAC GTCATTAGCA
  Y
  TGTATCACAC GCCTCCTGCA AGGTCTGAAG CCAGACCCCA TGGACCTATG TGGGATCCTT
  CTGCCTTCCT TGGAGGACAT GTATGAGTAA AAGTCTTGGG GAACTTGGAG CCTAGGGGAG
  GAAAACTCAG ATACACGCAC GTAGGGGTAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
ss61379698	NES16766904	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T		C
ss322906203	CHEV_9_36985366	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
rs51055109					SNP	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61379698	NES16766904	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37089077 () rs orientation: forward

Symbol	Name	Function Class
Gm67648	predicted gene, 67648	within coordinates
Rr401317	regulatory region 401317	393 bp downstream
Rr676635	regulatory region 676635	1361 bp distal
Rr676636	regulatory region 676636	378 bp distal
Rr676637	regulatory region 676637	501 bp distal
Rr676638	regulatory region 676638	within coordinates
Rr676639	regulatory region 676639	799 bp proximal