rs51057645 SNP Detail

Summary

• ID
  rs51057645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:108777883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCTGCA GAGCCAGCAG
  CAGCAGCAGG CGCAGGCGCA GAGGGTGCGA TCCTACGGAC CTCAAGCTCC TAGGAGGCAC
  GGAGGTAGGG CTGTCGCCAT CTGACCCTAA CCTCATCTGG TTGCTTCCGC TGGCCCAGGT
  CCAGCCTAGG TGGCTAGAGC GTCGCGGGAC GTTGGGCGCG CGCTGCGGAC CGCCCCAGAG
  Y
  CCGCCGCTCG CGCCTGACGC CTCAAGGTAA AGCGAGGCCT GGAGCCCACC CTAAGTGTCC
  CTAATGCCCG GTTTAGGAGA GGAGGGTATC TTGCAGACAA GCAGCCAGCC TATGAGCCAC
  AGACACTTAT GTTTTGGTCC ACACAGGTTT GGGGGAGGAT GAACTAGTTG CTAGAATTAA
  GACCGAAAAA CGTAGTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61215756	NES16730246	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51057645					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61215756	NES16730246	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:108777883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16204	CpG island 16204	within coordinates
Gak	cyclin G associated kinase	262 bp upstream
Rr616724	regulatory region 616724	within coordinates
Rr616725	regulatory region 616725	3 bp proximal
Tmem175	transmembrane protein 175	within coordinates
Tssr47844	transcription start site region 47844	141 bp downstream
Tssr47845	transcription start site region 47845	within coordinates
Tssr47846	transcription start site region 47846	11 bp upstream
Tssr52443	transcription start site region 52443	339 bp upstream
Tssr52444	transcription start site region 52444	310 bp upstream
Tssr52445	transcription start site region 52445	256 bp upstream