rs51058735 SNP Detail

Summary

• ID
  rs51058735
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66134643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACTATTTG CTATAATGGA TGTATCTGAT GGCCCCTGAA
  GATTATCAAG TGTTACTGAT AATCTTTGGT TAGCAGTGAC ACATCAGCAC TAAAAAGTGC
  W
  GATACATCTT CTTCTCACCA GGGCAGGGCA GGGCTCAGCC ATCGTTCTGT CATCTATGTC
  AGAGTAAATA AAACTTGAAG CCGAAATGAT CTCATTTTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss63157241	NES17452204	PERLEGEN	MM_PANEL2	f	SNP	A		A	T	A	A	A	A	A	T	T		T	T	T	T		A
ss147324380	ENSMUSSNP1236111	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss325658933	CHEV_18_66161226	CHEVERUD	SCREENING_POP	f	SNP												T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51058735					SNP	A	A	A	T	A	A	A	A	A	T	T	T	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63157241	NES17452204	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66134643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10156	CpG island 10156	495 bp proximal
Lman1	lectin, mannose-binding, 1	within coordinates
Rr353056	regulatory region 353056	within coordinates
Rr405704	regulatory region 405704	975 bp upstream
Tssr153727	transcription start site region 153727	1040 bp downstream