rs51058922 SNP Detail

Summary

• ID
  rs51058922
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73187877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACCCTGC TGTTACCAGG
  CGCTCACACA GCCAATCAGC ACTCGCCGCA AGCGCCGGCC GGCCTTTGAA CTCCGCACAG
  CAACTTCCTG CTGTTTGGCG AGTACACAGT GCAATGCAGT ATGTCTGTCA GCGCTGCGGC
  ACAAAGGAAC AGCCATTTTG TGACTGAGCT GGACTTGCAC CAAGATGCCA GGGCCTCCGA
  R
  AACTGCTGCC TGCGCCAACT ACCGAGCTGC CTTTTATTTC ATCATCAGAG TACTTATGGG
  AACGTGGGGA AAAGGATGTT CTGATATTAG GTTTGTTTTC AGCGTTCTTA AAAATTCGAT
  TTTTTAAAAG TATTATTATC AGCGTCATAA AATGGCTGCC ACTTAAAACT GCCTGTCCCA
  GTACACAAAC ACTGCTCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61020028	NES16105283	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51058922					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61020028	NES16105283	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73187877 () rs orientation: forward

Symbol	Name	Function Class
Chaserr	CHD2 adjacent suppressive regulatory RNA	1669 bp downstream
Chd2	chromodomain helicase DNA binding protein 2	within coordinates
Cpgi19266	CpG island 19266	within coordinates
Gm44686	predicted gene 44686	within coordinates
Rr167999	regulatory region 167999	within coordinates
Rr380950	regulatory region 380950	within coordinates
Tssr67202	transcription start site region 67202	159 bp downstream
Tssr67203	transcription start site region 67203	71 bp downstream
Tssr67204	transcription start site region 67204	37 bp downstream
Tssr67205	transcription start site region 67205	1235 bp upstream
Tssr72947	transcription start site region 72947	363 bp upstream
Tssr72948	transcription start site region 72948	1131 bp downstream