rs51059036 SNP Detail

Summary

• ID
  rs51059036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57532090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATGTAATA AAATGTCTCT
  GTGGGCTCCA CCCGGACCTC AAAACTGGGC AGCACTAGGA TGGGGTATGA AGACGATGGT
  GTTGGCATGG CTGCCAGGGC AGCATAAGCA CAAGGGCCTC ACCTGCTGGA TGCCCCAAGA
  CTTACCGTAT TCCTTCACCT CAAACTCTGC GGAGAAGATC TGCTTCGGCG CATGTTCGTA
  R
  AAGGCTCGGA TCTTCCACTG CCCCATGCTG CAAGAAGATG AGGAATGTGG CAGAGCCTCC
  AAGAGCCTCT CCCCCATCTC TCCCCCCGGA CGGGGGAATC CCGTTTTTTG GAGGCTCAGA
  TTTACTTGAC CAGTTCAGGA ATGTTCCAAG ACAAAGGCAA GATGCCGTGT TGGTTGTTGG
  AAGACAGAAT GTCTCTCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62812187	NES17355701	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51059036					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62812187	NES17355701	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57532090 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	275 bp distal
Tssr145378	transcription start site region 145378	1955 bp downstream
Tssr145379	transcription start site region 145379	1880 bp downstream
Tssr145380	transcription start site region 145380	1835 bp downstream
Tssr145381	transcription start site region 145381	1781 bp downstream
Tssr145382	transcription start site region 145382	1227 bp downstream
Tssr145383	transcription start site region 145383	1150 bp downstream
Tssr145384	transcription start site region 145384	980 bp downstream
Tssr145385	transcription start site region 145385	159 bp upstream
Tssr145386	transcription start site region 145386	935 bp upstream
Tssr145387	transcription start site region 145387	1166 bp upstream
Tssr145388	transcription start site region 145388	1748 bp upstream
Tssr148947	transcription start site region 148947	1891 bp upstream
Tssr148948	transcription start site region 148948	1807 bp upstream
Tssr148949	transcription start site region 148949	1751 bp upstream
Tssr148950	transcription start site region 148950	1197 bp upstream
Tssr148951	transcription start site region 148951	1168 bp upstream
Tssr148952	transcription start site region 148952	1108 bp upstream
Tssr148953	transcription start site region 148953	927 bp upstream
Tssr148954	transcription start site region 148954	902 bp upstream
Tssr148955	transcription start site region 148955	757 bp upstream
Tssr148956	transcription start site region 148956	724 bp upstream
Tssr148957	transcription start site region 148957	138 bp upstream
Tssr148958	transcription start site region 148958	13 bp downstream
Tssr148959	transcription start site region 148959	173 bp downstream
Tssr148960	transcription start site region 148960	927 bp downstream
Tssr148961	transcription start site region 148961	964 bp downstream
Tssr148962	transcription start site region 148962	1110 bp downstream
Tssr148963	transcription start site region 148963	1162 bp downstream
Tssr148964	transcription start site region 148964	1195 bp downstream
Tssr148965	transcription start site region 148965	1706 bp downstream
Tssr148966	transcription start site region 148966	1723 bp downstream