rs51059487 SNP Detail

Summary

• ID
  rs51059487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20888381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACCCCCA CACACACACT
  CCTGCCCTGC TCCTCCCAAC CCCCACTCGT GAGAACTGCC GTGGCATGAT GTCACGGCCG
  CGTGACGTCA CAGCTCTCTT AACCCAGGTG ACCTAGTACT GAAACAACTG TATTCCATTT
  GGCTTAGCGC CAGGCTAATG CTTGGGACCT GGAAATGGAG GAAATCACAC TTACCTACTA
  Y
  GTGAGAACTC AGCAATTCAA GATTAAGCAC CTACTATGTG TTTCTACAAG AAATAAATTC
  CTACACTGTA TCATACCCAG CCCCCCAAAC AGAAGACTTG GTAAGAACTC CCAGATCCAA
  CTGGGCTTTG TGGCACATAT GCCTGTCATT CCAGCATCTG CCACCTGGGA GGTGGGAAGA
  TCAGGAGTTC AGGGTCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61357544	NES16731720	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51059487					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61357544	NES16731720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20888381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21408	CpG island 21408	6 bp distal
Rr193935	regulatory region 193935	20 bp proximal
Rr206018	regulatory region 206018	within coordinates
Rr383049	regulatory region 383049	within coordinates
S1pr2	sphingosine-1-phosphate receptor 2	292 bp upstream
Tssr83937	transcription start site region 83937	1158 bp downstream
Tssr88347	transcription start site region 88347	366 bp upstream
Tssr88348	transcription start site region 88348	337 bp upstream
Tssr88349	transcription start site region 88349	311 bp upstream