rs51059716 SNP Detail

Summary

• ID
  rs51059716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135766156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACTAGAAC ACAGCTCCAC CCACTGTTAA
  GACACCTCAC ACGTTTGGTT TTTCACTATC TAAATGTGGG GACGGTGGCA GGTCAGGGTG
  ACATGTTGCG TGGGGCTGCT GTCCGGGGTT CCACTTGAGC AGGGCTCCTC CCCACAGTCT
  Y
  GGTCCTACTT CAGCGGAGGG AGCAATGTGA GGAGTTGCTT TGCTTGTTTC CAGCTGAGCA
  GGCCTGGACC AGCCCCAAGT CGCAGTGAGT TCTGAGTCTG AGGCAGTCTC TACTTAGAGC
  ATCTGGGAAC TCCCTGCTTC CTGGATACCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145548058	ENSMUSSNP227413	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss319993847	CHEV_1_137734995	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51059716					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135766156 () rs orientation: forward

Symbol	Name	Function Class
Rr419294	regulatory region 419294	1995 bp distal
Rr419295	regulatory region 419295	1686 bp distal
Rr419296	regulatory region 419296	833 bp distal
Rr419297	regulatory region 419297	within coordinates
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9006	transcription start site region 9006	within coordinates
Tssr9007	transcription start site region 9007	489 bp upstream