rs51059725 SNP Detail

Summary

• ID
  rs51059725
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46042604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGTGAC ACACCTTCCT
  GGGACCCGGA TGACCTGGGT AAGAGGCTCG CTTCAGATTT TATGTTCAAC AGTTTGCATT
  CTCCTCTGTC TCGGGATGTA TACAGATTCT GCTGCACACA GAGGCAAGAC GACCCACCCC
  AATCCCTGCA AGCCAGATCC TGTGAAGACA GCAGACCAGC CAGTATCCAC AGCAGCCCCG
  K
  GCAATAGGCA TGACTAGCAA GTCCCATGCT ACAATGAGAA AACCAGTGCT CGCACCTCTT
  ACCCACTTAG AGGAAGACAG GGTCCTCTGA AGCCAGATTC TTTTTCTCAC AACAGATGGA
  TTTCTGGAAT ATTCTAGGAT GTCAAGCTGA GGCAGGCTTC CTGTAAGGTT AGGAGTAGTA
  TGGTTGATGA TATCCAAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60259550	NES15753002	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	G	T	G	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51059725					SNP	T	T	G	G	T	G	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259550	NES15753002	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46042604 () rs orientation: forward

Symbol	Name	Function Class
1600014C23Rik	RIKEN cDNA 1600014C23 gene	1186 bp downstream
BE949265	cDNA sequence BE949265	within coordinates
Cpgi9207	CpG island 9207	1830 bp proximal
Rr331489	regulatory region 331489	within coordinates
Rr339882	regulatory region 339882	1596 bp proximal