rs51060752 SNP Detail

Summary

• ID
  rs51060752
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4561748 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TGGGATTGGA AACTCTGCTC
  CGGATAATAG GGGAGGGGGT GGCCTTCCTC TCTCTCTCCA GCCAGGTCTG CTTCCAACTT
  TCTCAGCGTT TGCCTACAGA TAGATGTTTG CAGAAGGACA AGCCTCTGGC TGAAAAAAAA
  AAAAAAAAGT GATCCAACCC ACTTTCTCTT TCCTTGCAAT AAAGCTCGAA GTCTAGACGA
  W
  CATGTTGACT TGGAAAAAAT AAAATAAGGG AGCGTTCTTT CTGCACACAG ATTTTCCTCG
  CTGAAAACTA GCTAAGAAGG GGCATAAGGG TGTTTCTAAT GTGAGCGCTT CTCAGAGTTT
  CTCTTTCACT CATTGACTCA ACCAGCTAAG TCCGTGGCTC AGCAGTTCTT GTCACTGATT
  AATGAATGGG GTTCCTGATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52131374	NES15248715	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51060752					SNP	A	A	A	A	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52131374	NES15248715	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4561748 () rs orientation: reverse

Symbol	Name	Function Class
Esr1	estrogen receptor 1 (alpha)	241 bp upstream
Rr368918	regulatory region 368918	622 bp upstream
Rr426997	regulatory region 426997	within coordinates
Rr426998	regulatory region 426998	284 bp proximal
Tssr92263	transcription start site region 92263	115 bp downstream
Tssr92264	transcription start site region 92264	65 bp upstream
Tssr92265	transcription start site region 92265	90 bp upstream
Tssr92266	transcription start site region 92266	122 bp upstream
Tssr92267	transcription start site region 92267	197 bp upstream
Tssr92268	transcription start site region 92268	223 bp upstream
Tssr92269	transcription start site region 92269	303 bp upstream