rs51064878 SNP Detail

Summary

• ID
  rs51064878
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151352201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTAGAAC CCAGCCATAG
  ATTAGGATAA GAGGGGGAAG GCTTACCTTC TGGGATGCAC TGCTGGTAGG AGGTTTTAGT
  TAAAGTCCTG TCTCATCTCA GCACTTAGAA TAAGTATAGT CTCTCCAACA GAATATTTTA
  CTGGAAGAAA GTTCATGATT GTGAGTATAA ATGATGTTTG CTGAGTGATG TCCACCAGCC
  C
  TAAGGATGCA AAGAAAATTG AATGAATTTG TGATAGATAT AATATTAATG GGTGAAATTA
  ACACAACATG TCAAGTTGAC TCTTTCCAAC AAGGTACCCA GGAGTCACTG TGAAGAGGGT
  TAGTGGCTCA GTCTCTGATT GCTCCCAGAA ATCCAGGTTA GTTGACTAAC CTGGAAGTTC
  ACACCTTCTT GCCTGACAGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144728541	ENSMUSSNP655426	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51064878					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151352201 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	526 bp upstream
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	573 bp upstream
Rr117371	regulatory region 117371	1601 bp distal
Rr378823	regulatory region 378823	781 bp upstream
Tssr54686	transcription start site region 54686	574 bp upstream
Tssr54687	transcription start site region 54687	549 bp upstream