rs51065464 SNP Detail

Summary

• ID
  rs51065464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108532827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATCCTTT CTTTTGATAA
  TGCCATTTAA CCACCAAATT CTTTCTTTAA ATGTACTAGT CTTGCTCTCA TTCACCTTAA
  GCCCTCTACA TGAACTGTTC ACTCCACCAG AAGAGCTCTC CCTACAAAAC CCCAAATAAT
  AGTTGGCTGC CTGAATTCTT CAAGTTTCCA CTCCAACTTG ATACCCTCAT TGTATCCTAC
  Y
  CTAACCCTTC ATAATCTTTC ATGCTCTCAT AACCTCCACT GATCATTTCT TTCTCATAGC
  ACAGTCAAAT AGTAATAATA ATTTACTGTG TATCGAAGCA CTTTCTAACC TAATGTAGGA
  TTTAGTCCTT TTCTCTCCCC CAAAGAGAAT GCAACCCTTT GCTATTTAGT TCACTTATAT
  ACCCTAGCAT ATAAGAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388623	CHEV_7_116077134	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51065464					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108532827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	646 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	686 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	795 bp upstream
Rr400539	regulatory region 400539	537 bp upstream
Rr652951	regulatory region 652951	917 bp distal
Rr652952	regulatory region 652952	307 bp proximal
Rr652953	regulatory region 652953	527 bp proximal
Tssr68456	transcription start site region 68456	785 bp upstream
Tssr68457	transcription start site region 68457	897 bp upstream