rs51065825 SNP Detail

Summary

• ID
  rs51065825
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167893331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTTGCAGGAA CTTTGAACAG CAGGAATACA TGCATGCATA
  CATACATACA CACATATACA TACATGCACA CCTTGTAAGA ATGGGCTTGT ACAGGAAGTG
  G
  AGAGTCGCTT AACTGTCCCC TACATAACAG CCAGGTGAAT AAAATGAAAG TGAGCTGTGA
  CCTGCTGCTG TAATCCCAGC ACTCGGGAGG CTGAAGCAAG G                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148265666	ENSMUSSNP5954212	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51065825					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167893331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	501 bp distal
Gm57439	predicted gene, 57439	984 bp upstream
Rr406967	regulatory region 406967	541 bp distal
Tssr27820	transcription start site region 27820	1330 bp upstream
Tssr27821	transcription start site region 27821	1047 bp upstream
Tssr27822	transcription start site region 27822	1011 bp upstream
Tssr27823	transcription start site region 27823	983 bp upstream
Tssr27824	transcription start site region 27824	535 bp downstream