rs51065915 SNP Detail

Summary

• ID
  rs51065915
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86425727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCGCTCAT CACATACGGT
  GAATGGTGCC ACTCACACAA ACCTTACTGA AGACAGCTGA ATAGCAAGGA AAACTGTCTT
  TTCTTTCCTC TGCACACAGC CTCATTACCA GCATATAATG GGCACTCACT CGATAAAAAG
  ACTGAATGTA GGCAATTGGG TCTAAACTCT GCAAGAATAT ACTCTAAATT GCTGTGCCTG
  W
  GGATCTTCTG GAAAGAGAAG TGGGGGAGGG AAAAGGAAAG AACAAAATGT TACTAAGCTG
  AACTGTATTC ATTGGGATTC TGAGTCTGTA CTGTGTATTC CACATAGCTT TCTCATCTGG
  AGAAAGGGTG TCATGTCACC CCATCTAGTT TTCTTGCAGC TGTTGGTTGG TTGTTTTGGT
  TTGCTTGTGA TAGTGCTGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61435739	NES16815263	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51065915					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61435739	NES16815263	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86425727 () rs orientation: forward

Symbol	Name	Function Class
Dop1a	DOP1 leucine zipper like protein A	within coordinates
Rr211041	regulatory region 211041	within coordinates
Tssr86395	transcription start site region 86395	1556 bp upstream
Tssr86396	transcription start site region 86396	1582 bp upstream