rs51066077 SNP Detail

Summary

• ID
  rs51066077
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109749246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAAACTT TGGCCACGGA
  TGAGGGCGCC TAGAACTTGG CCTGCGTTTG CCGACCAGGC ACGTTCCATG GGGAAGCACC
  TGAATACCCC CAGGGTTCCC GCAGGCGGAG TGAAGAAACA CCTGTACCTA AGAAGGGGAA
  TCGCTTTCCA GTTTGGCCCC GTCCTGCCTG TGCAGTGTGA CACCTTAGCT CAGATCCACT
  M
  GGGACTCATT ACCACGAGCA GAGCCCAGGG AGGAGGAGAA GGATTCGGCC TACCCTGGGC
  GGGGATCCTT AGTGAATAAG GCATTTAAAA GAAGGAATGC TGACCTGAGG TAGAGAATGT
  TGGGAGAGAA AGTTCTAGAG CATGTGATCA GTGCAGTCTG TAAGGTGGGC AACCGTTTTC
  CGCCTGTACC TTCAGCAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147206190	ENSMUSSNP7053930	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51066077					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109749246 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	40 bp distal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	Intron
Rr397176	regulatory region 397176	1242 bp downstream
Rr562509	regulatory region 562509	1244 bp distal
Rr562510	regulatory region 562510	within coordinates
Rr562511	regulatory region 562511	1117 bp distal
Rr562512	regulatory region 562512	1078 bp distal
Rr562513	regulatory region 562513	690 bp distal
Rr562514	regulatory region 562514	1120 bp proximal
Tssr19307	transcription start site region 19307	1309 bp downstream
Tssr19308	transcription start site region 19308	1263 bp downstream
Tssr19309	transcription start site region 19309	1245 bp downstream
Tssr19310	transcription start site region 19310	1215 bp downstream
Tssr19311	transcription start site region 19311	1165 bp downstream