rs51073031 SNP Detail

Summary

• ID
  rs51073031
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94226440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTATCTTAG GTTGTGCCTG
  AAGTATTAGT TCTCTGAAGA GTGCCGAGGT GTCTGTCAGC AGACAGTTTT AATGAACAAA
  GTCTCAACAT TTACTGTTTA TCATGGGGGG TGTCTGCAAT TATTGAGAAC ACATGAAAGG
  AGCTATAAGT TTTTGGTCTA ATTTGCATTA ATAAGTTATT ATCTGGTCTG TATAATCTAC
  R
  GACTTAGGGA AATCTTTTCA AATCTCTTGT TTGGGGGAAA AGCTTATTAT AGCTTACCAG
  TAGGAATTAC TCAAGTTAGG TGAAACAGTT TCTGTGTAAC TAGGAGGAGG ATGCTGTGAC
  TCAGAAGCCA TGGAGTCTAA ATGGCCTTCC CTCAAGTTGG TCCCTTACTA TGTCTTGCAA
  TGAGAAATTT AGTCTCTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss60515583	NES16522997	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs51073031					SNP	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60515583	NES16522997	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94226440 () rs orientation: forward

Symbol	Name	Function Class
Tssr139547	transcription start site region 139547	474 bp downstream
Tssr139548	transcription start site region 139548	603 bp upstream
Ttc3	tetratricopeptide repeat domain 3	within coordinates