rs51074482 SNP Detail

Summary

• ID
  rs51074482
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:146789861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCA CTCCCAGCTC CGCTGGGCTC
  K
  GCCAGGAATG TGGGAGACCA GGCGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss134003338	ENSMUSSNP152122	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss322083554	CHEV_6_146836885	CHEVERUD	SCREENING_POP	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51074482					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:146789861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18173	CpG island 18173	within coordinates
Gm66444	predicted gene, 66444	within coordinates
Ppfibp1	PTPRF interacting protein, binding protein 1 (liprin beta 1)	124 bp upstream
Rr145955	regulatory region 145955	within coordinates
Tssr59600	transcription start site region 59600	118 bp upstream
Tssr59601	transcription start site region 59601	230 bp upstream
Tssr59602	transcription start site region 59602	269 bp upstream