rs51074660 SNP Detail

Summary

• ID
  rs51074660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:91632227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGCCCA GCTGTGACAC
  ACTGTGCAAT GTCGACCGAC TACTGCCTTC TATTCTTTAA AACAGTAGCC TTGTGCTCTG
  TGCTTGGGCA TTGGCTAGGG ATCATCTCGA ATCTCCTTTG CAGCTAAACA GGCAGCAGAG
  CAGTCGGTGG TCTCTGCCAC CTCACCTTTG CATGTCACAG AAGTCAAGGC AAGCTGAACA
  Y
  CTACATGCTA GGCATTCTGT CCCAGGAGAA ACCCCATTGA GAGACACCTA CCCGGCACAG
  GCCCTGTTAT AACCACGTCC AGGGATGGGG ACACTAAAGC ACGGTGGTTC AGTGATCGGC
  CAAAGTCACA TAGGGAGAGA TAAGATCTGA GCCAAGAAAG AGTGACATTG CAGCTAGCCT
  CTGTAACCTC ATATGCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss61672058	NES17617493	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs51074660					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61672058	NES17617493	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:91632227 () rs orientation: forward

Symbol	Name	Function Class
Gm51993	predicted gene, 51993	within coordinates
Gm59627	predicted gene, 59627	within coordinates
Ston2	stonin 2	within coordinates
Tssr114594	transcription start site region 114594	1549 bp upstream