rs51078328 SNP Detail

Summary

• ID
  rs51078328
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12745064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT CGCGTCTCCC AGCACGAATC
  R
  CCCAGCCTCG GAGCCGTGGA TCCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146804282	ENSMUSSNP4432917	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51078328					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12745064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1300	CpG island 1300	1591 bp distal
Cpgi1301	CpG island 1301	within coordinates
Gm66629	predicted gene, 66629	within coordinates
Rr224421	regulatory region 224421	within coordinates
Tssr3138	transcription start site region 3138	122 bp downstream
Tssr92368	transcription start site region 92368	888 bp downstream
Tssr92369	transcription start site region 92369	339 bp downstream
Tssr96723	transcription start site region 96723	1133 bp upstream
Tssr96724	transcription start site region 96724	1093 bp upstream
Tssr96725	transcription start site region 96725	1016 bp upstream
Tssr96726	transcription start site region 96726	183 bp upstream
Tssr96727	transcription start site region 96727	98 bp upstream
Tssr96728	transcription start site region 96728	169 bp downstream
Tssr96729	transcription start site region 96729	310 bp downstream
Utrn	utrophin	within coordinates