rs51079011 SNP Detail

Summary

• ID
  rs51079011
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6883692 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                        CTTCATGATG ATTTAACACT TCATTTCCTT TCTCCCTGTT
  ATCTCCTTGC ATGGAGTTAA TTCAGGGTGT TTGTGGCCAC ACATATCCAC AAAGTCAGAG
  S
  GCTGGTGTCT TAGGGTTTTG TTGCTGTGAT TAGACACCAT GACCACTACA ACTCTTACAA
  AGGAAAACCT TTAGCTGGGG CTGGCTTACA GTTCTGAGGT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60526298	NES16538766	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51079011					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60526298	NES16538766	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6883692 () rs orientation: reverse

Symbol	Name	Function Class
Gm64560	predicted gene, 64560	1219 bp upstream
Rr521399	regulatory region 521399	129 bp distal
Rr521400	regulatory region 521400	913 bp proximal
Rr521401	regulatory region 521401	1230 bp proximal
Tmem181c-ps	transmembrane protein 181C, pseudogene	within coordinates