rs51080898 SNP Detail

Summary

• ID
  rs51080898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108638741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCTCTCGC CGCCTGCAGG CGTCACGGGG AACTGCATGC
  TAGACGGGCG GATCAAAGCT TCTGGTTTGG AGGGAACCCA TCCCCAGACC CAGAACTTCC
  Y
  AAGCAGAGGC AGAACCAGAA CCATCTGGGG CCTCTTTAAG TTGGCTTCAA CACTAACACA
  GCTTCCTTTT GGTAGTTTTT TTTTCTCTCT CTCACCACC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133506682	ENSMUSSNP4200679	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51080898					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108638741 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	846 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	within coordinates
Cpgi17812	CpG island 17812	47 bp distal
Rr399817	regulatory region 399817	within coordinates
Rr636155	regulatory region 636155	1843 bp distal
Rr636156	regulatory region 636156	896 bp distal
Rr636157	regulatory region 636157	1035 bp distal
Rr636158	regulatory region 636158	356 bp distal
Rr636159	regulatory region 636159	within coordinates
Rr636160	regulatory region 636160	1800 bp proximal
Tssr58072	transcription start site region 58072	1334 bp downstream
Tssr58073	transcription start site region 58073	1283 bp downstream
Tssr58074	transcription start site region 58074	1246 bp downstream
Tssr58075	transcription start site region 58075	1098 bp downstream
Tssr58076	transcription start site region 58076	993 bp downstream
Tssr58077	transcription start site region 58077	914 bp downstream
Tssr58078	transcription start site region 58078	3 bp downstream
Tssr58079	transcription start site region 58079	210 bp upstream
Tssr58080	transcription start site region 58080	559 bp upstream
Tssr58081	transcription start site region 58081	990 bp upstream
Tssr58082	transcription start site region 58082	1339 bp upstream
Tssr62391	transcription start site region 62391	1957 bp upstream