rs51080915 SNP Detail

Summary

• ID
  rs51080915
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:123560187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGA GAAGGCCTGA AAGGACATGG
  A
  AAATCCTTGG GGCAAATGCT CAAAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147364460	ENSMUSSNP3852295	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51080915					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:123560187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14755	CpG island 14755	833 bp distal
Gm12925	predicted gene 12925	within coordinates
Macf1	microtubule-actin crosslinking factor 1	within coordinates
Rr84970	regulatory region 84970	214 bp proximal
Rr84971	regulatory region 84971	1014 bp proximal
Rr99952	regulatory region 99952	186 bp distal
Rr377113	regulatory region 377113	within coordinates
Tssr38865	transcription start site region 38865	1562 bp downstream
Tssr43288	transcription start site region 43288	1589 bp upstream
Tssr43289	transcription start site region 43289	906 bp upstream
Tssr43290	transcription start site region 43290	881 bp upstream