rs51085326 SNP Detail

Summary

• ID
  rs51085326
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:25945396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAATTT AAGGAATTAA
  TAACTGCTGG ATATGACATG AAAACACACA TAGTATGGTG GAGAAGAGAG ACCCTGAAGA
  ACAAAGATGC CCCTGGATTT TACAATGTCC TTGGTCTATC TGCTGGCACT TGTCTGTCAC
  TGTGTCCTCC CATGTGTGAG GGCTGCTTAC TTCTCTTGTG CCCTGCCATC CTTGTCATTC
  W
  AGTCACTAAG AACTTAGATT TTTATTAAAA ACTTACTCGG TTATAGTCAA GGCAAGAAAG
  TTACAGGCTA CCATGCGTAT ATGGCCAAAT AAGAGTCCTT GATTTAGGCT GGCTACTGAA
  AGCAAGTTCT TGTCACAAAG AACTCTTGTT CCAAAGCTTA GGGCTACAGT GTTTATAAAG
  AAAAATACCA CAAAACCCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61129736	NES16639198	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51085326					SNP	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61129736	NES16639198	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25945396 () rs orientation: forward

Symbol	Name	Function Class
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Rr608568	regulatory region 608568	1004 bp distal
Tssr50419	transcription start site region 50419	116 bp downstream