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rs51089094 SNP Detail
Summary
  • ID
    rs51089094
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:73285994 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAAACAAAAT AGTGTTTTTA
    GAAAGCTCAT AAAACAGGCA GGTGTGGTGG CGCACGCCTT TTATCCCAGC ACTTGGGAGG
    CAGAAGCAGG TGGATCTCTG ATTTCAAGAC TAGTTTGGTC TACAGAGCGA GTTTCAGGAC
    ATTCAGGGCT ACACAGAGCA ACCCTGTCTC AGCCCCACCC TCCAAACAAT TCTTTGACCA
    Y
    ATAATTCTCA GATTGCCTTA ATATCCTTGT TTCCAGAAAT AAAATCTGCT TTAAAACAGC
    TTTGAATGGA TCGCAGCCAA GATACAAACC CTGCAGATGT GTCAGACAGC TGCCTATTTT
    GAGGATACTG TCAAACTTGC ACCAACGGGG GCCATCATCA GTAAACTACA GCACCAGAAA
    CCCATGGGGG GGCCTCGTGA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss61019820 NES16103701 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T C T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs51089094 SNP T T T T T T T T T C T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61019820 NES16103701 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:73285994 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm44737 predicted gene 44737 within coordinates
Rr171673 regulatory region 171673 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory