rs51089357 SNP Detail

Summary

• ID
  rs51089357
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78956032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC TCACCAGCAT CCCAGTCTCT
  W
  CACCAGCATC AAATATGTAT TTTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61654168	NES17605703	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	T	A	A	A	A	A	T		A	T	A	A		A
ss324107209	CHEV_12_80010245	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51089357					SNP	A	A	T	T	A	A	A	A	A	T	T	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61654168	NES17605703	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78956032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4796	CpG island 4796	1996 bp distal
Gm46359	predicted gene, 46359	1717 bp upstream
Gm56547	predicted gene, 56547	1668 bp upstream
Rr265602	regulatory region 265602	1831 bp distal
Rr387474	regulatory region 387474	563 bp upstream
Tssr116800	transcription start site region 116800	871 bp upstream