rs51091224 SNP Detail

Summary

• ID
  rs51091224
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70988416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCGACCT CCACAGTGCC
  ATGCACCCTA CACACATAAT AAATAAATGT CTGAAATGCC TCGAGTCCCT ATGGATTTTT
  TTTTTTTAAG TTTTATTCTG AAAGTAGTGC AAAGTCCAAA GTTAGAGCAT GAACATTCCT
  TGTAAGGTCA TGATGTGTCA GAATTCGAAG TAAGAGGATC AGAAGAGGGT TGGAGATGCA
  R
  GTGACAGAGG GTGGGTTTCA AACACAATAG GCTTTCCCTT GCCTTCTAAA CCACTGTACT
  GTTTGGGTCT GGCGCCCTCC AGTGGCACTC AGAGTCCTAG AGCCGAGACT CATATATCCC
  TTCTTAAACC CTGTTTTCAG TAGGAGGAAT TCAGTTCTTG TAAGTTTATC CTGATGAAGG
  AAGCGATAAT GAGGGTTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52651873	NES15472147	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	G	A		G
ss324417465	CHEV_13_70979175	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51091224					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651873	NES15472147	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70988416 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Cpgi5821	CpG island 5821	940 bp proximal
Gm36529	predicted gene, 36529	153 bp upstream
Rr482298	regulatory region 482298	142 bp distal
Rr482299	regulatory region 482299	within coordinates
Rr482300	regulatory region 482300	69 bp proximal
Rr482301	regulatory region 482301	164 bp proximal
Rr482302	regulatory region 482302	392 bp proximal
Rr482303	regulatory region 482303	1425 bp proximal
Rr482304	regulatory region 482304	1504 bp proximal
Tssr123158	transcription start site region 123158	1406 bp downstream
Tssr123159	transcription start site region 123159	1432 bp downstream
Tssr123160	transcription start site region 123160	1465 bp downstream
Tssr123161	transcription start site region 123161	1493 bp downstream