rs51092986 SNP Detail

Summary

• ID
  rs51092986
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151246834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAACTGGAC AGAAAAAAAA ATATGTCTAT
  AAGCTATTGA AAAGGTCTGA TTTAGGACct ggagagatgg ctcagcagtt aagagcactg
  tctgctcttc cagaggtcct gagttcaatt cccagtaacc acatggtggc tcacaaccat
  M
  tgtaatggga tctgatgccc tcttcaggtg tgtctgaaga cagctacagt gtactcatat
  atatatataa aataaaaaat tttttaaaga GGTTTGATTT AGGAAAAGGT TTGAATTAAC
  GGTATTTCTG TCCCTTCCTC TTCCCTtcac                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145718917	ENSMUSSNP3126590	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C		A
ss320055953	CHEV_1_153218213	CHEVERUD	SCREENING_POP	f	SNP				C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51092986					SNP	C	C	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151246834 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr420285	regulatory region 420285			487 bp proximal
Swt1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant