rs51094972 SNP Detail

Summary

• ID
  rs51094972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125220825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGATCTC ATTTTGAATT
  TTCGAACAAA AAATAAATTC TGAAGGAAAA TACATGAATG TTTTTTGTTT GTTTGTTTTT
  TGAGACAGGG TTTCTCTGAA TAGCCCTGGC TGTCTTGGAA CTCACTTTGT AGACCAGGCT
  GGCCTTGAAC TCAGAAATCC ACCTGCCTCT GCCTCCCGAG TGCTGGGATT AAAGGTGTGC
  R
  CCACTATTCC CGGCCAGGAA AATACATCAA TATTAATACA ATCTCAGCCC TCTGGACCCC
  AGACATATGG AGGTACAAAT GGGACCTTAA TGACAAATGG GACCTTATTA ACAACACATG
  TGTTTGTGGA TCCTCTTTAC CTTTGTCACA CGAGTCATCA GGTCAAGATC TTGTATGGGT
  GGTAAACTGG GTGTCCTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135808304	ENSMUSSNP6765566	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320936352	CHEV_3_125130094	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51094972					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125220825 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584610	regulatory region 584610	978 bp distal