rs51095568 SNP Detail

Summary

• ID
  rs51095568
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148515677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCGGAGG ACCTTGGTGA
  GAGAGTGGCA AGAGCAGTAT CAAGCTGGCT CCGAATTCAT CTATAGGGCC AGCTTCCTCC
  TTGCTCTGTG TGGAATCCAT CGTTCATAAA CTGATAAGCT TAAAAAAATG AAACCGGGCA
  TGGTGGCGCA CGCCTTGAAT CCCAGCACTT GGGAGGCAGA GGCAGGCGGA TTTCTGAGTT
  C
  GAGGCCAGCC TGGTCTACAA AGTGAGTTCC GGGACAGCCA GGGCTACACA GAGAAACCCT
  GTCTCGAAAA ACCAAAAAAA AAAAAATGTT GGCCCAGGCA TGGTCGTGCA CACCTTTATT
  CCCAGCACAA AAGGCAGAGG CGGATGTCAT GAGTTCAAAG CCAGTGTGGT CTACATAGAA
  GTGGCAGAAA TACATAGAGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147930948	ENSMUSSNP5157730	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51095568					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148515677 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12399	CpG island 12399	689 bp distal
Gm75182	predicted gene, 75182	840 bp downstream
Nxt1	NTF2-related export protein 1	within coordinates
Rr397374	regulatory region 397374	1069 bp downstream
Tssr20647	transcription start site region 20647	1035 bp downstream