rs51095621 SNP Detail

Summary

• ID
  rs51095621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:80564148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTCTCTT GGTACATTCC
  TTCATGCTAT ATGGTGTCAT GTGCTACCTT AAGACACTGG GGAGTCTCTG CCAGGAAGAA
  GGTCAAAGGA TCGGGCCTGC AGACTTTGGT CTTGGTATCA TCTAGAACCA GGGTAAATAA
  ATCTTTCTTC TCTATAAGTT ATCTAGCTTT TAGTTACAGC AACAACAGCA ATGAAATTTG
  Y
  GCCAACCTCC TATGAAACTT TTGTGCATAT GTGAGATGTA TAAAATGGCA AGGCTGACCT
  TTAAAGCAGC TTTACTATAA TTGGTTTAAA AGTTGTCACC TGTGAAGGTG TAGCACTATA
  CTGGTTCTGT TTTCCATCTG GAATGCAAAC TTAGATGAGA GGAATGTTTA AAATACTCAG
  TTTATCTTCT TATAACAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61432490	NES16813875	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51095621					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61432490	NES16813875	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:80564148 () rs orientation: forward

Symbol	Name	Function Class
Rr683772	regulatory region 683772	within coordinates
Rr683773	regulatory region 683773	905 bp proximal
Tssr86335	transcription start site region 86335	182 bp downstream