rs51097246 SNP Detail

Summary

• ID
  rs51097246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154034716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATCTCTGC CACAGCCAAG CAGGGGGAGA TGAGGCTAAC
  CGCAGAGCAC TTCTCAATTT GAGACACTCA TCTGCTCAGA AGCACCCTCA TTTCAGAGAT
  Y
  CCCTTGGCCC CTAACACACA CAGACGCACC TATGGGAGTA TTCTCAGAAG CCTGGATCTC
  CTAGACACTG TTTTTCCTTT ATCCAGCCAT GGACATGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148023963	ENSMUSSNP2347103	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320569714	CHEV_2_154018532	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51097246					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154034716 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	1968 bp distal
Rr567775	regulatory region 567775	1762 bp distal
Rr567776	regulatory region 567776	1720 bp distal
Rr567777	regulatory region 567777	163 bp distal
Rr567778	regulatory region 567778	951 bp proximal
Tssr20974	transcription start site region 20974	1964 bp downstream
Tssr20975	transcription start site region 20975	1939 bp downstream
Tssr20976	transcription start site region 20976	1523 bp downstream
Tssr20977	transcription start site region 20977	559 bp upstream