rs51097311 SNP Detail

Summary

• ID
  rs51097311
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152585861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGTGAAT TACCCTGTGA
  GAAGCCAGTT TCCCAAGCTG TATGTGTGTA ATTCAAAAGG CTATATATAT ATATCTCCAT
  ACCAGGTCAA AATTAAATGG AGTCTTGCCT TTTTAAGAAC TGGGGCAATA TCTGGAAAAG
  TCACAAGACA ATGTCTGTGT TTAAAGGATT AAATTCCCTC TGTAAATTCC TTACTTAATG
  R
  TAAGTAGTCA CTGGAGGCCA GATAAGACAC ACTACAAGGG AAATGTCTCT TGCTCGGCTC
  AAGTTCAAAG CTGGGAACGC CGCCTGTCTT CCGTTTGTTT AGGCACCCAG AGTGATACCA
  TATGGAATCC AAGAGGTAAT TCTAACCTTT TATTCTCTCC TACCACACTG GAGCAAGAGT
  AAATTGAATC GCTGTCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136104273	ENSMUSSNP678956	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss321029024	CHEV_3_152543188	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51097311					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152585861 () rs orientation: forward

Symbol	Name	Function Class
Rr66444	regulatory region 66444	261 bp distal
Rr79922	regulatory region 79922	within coordinates
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates