rs51097852 SNP Detail

Summary

• ID
  rs51097852
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40584813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATCAATT ATGCTTATTT
  ATTTTTTATT TTTAATATTT GTTATACTGT TTATTAATTA TTAATACTTA CCCTTCACAC
  TTTTGCTATA AAAATTATAC TTTGATAAGC ATCTCATTCT TTGTTTCCTT GGATCAGTTT
  CTGAATCAAA AGACAAACAC TTCAGCTTCC GGGAAACTCA GTTGAAGAAG ACCACCAGAC
  R
  AAAGAGTATG TAGAACAGCC AAGGAAACAC TGCAGGAAGG AGAGGTGAGC AAAGGTTTAG
  ATACATTGTG ATAAAACCTC TCTGCAGGAG AAAAGACTTA CGTGGGATGA CTTGGCTACA
  ACGCAGGTCA AGCCCCATCT ACTTGGGATT AAAATTAACC TATGATCAAT TATTAGTCTG
  TATCTCTGAC ATCAGTGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60393100	NES15896487	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51097852					SNP	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393100	NES15896487	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40584813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13107	CpG island 13107	587 bp proximal
Intu	inturned planar cell polarity protein	746 bp upstream
Rr67318	regulatory region 67318	813 bp distal
Rr77556	regulatory region 77556	387 bp proximal
Tssr28946	transcription start site region 28946	343 bp upstream
Tssr28947	transcription start site region 28947	479 bp upstream
Tssr28948	transcription start site region 28948	727 bp upstream
Tssr28949	transcription start site region 28949	801 bp upstream
Tssr28950	transcription start site region 28950	884 bp upstream
Tssr28951	transcription start site region 28951	914 bp upstream
Tssr28952	transcription start site region 28952	944 bp upstream
Tssr28953	transcription start site region 28953	976 bp upstream
Tssr28954	transcription start site region 28954	1018 bp upstream