rs51100017 SNP Detail

Summary

• ID
  rs51100017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164946295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGGATTAC CATGAGGTCA AGCAGGAGGG AAAATCTGAT
  ATGGAAGAAG AGCTTAACGA TTACAATTGG CCACTTGGGG CTGGCTGCTT AGAGCTCATG
  R
  CTAAAGCCTA CAGCCAGGAC TTGTCCTCAA AACTACTCTT TGGCCACTTT AATGATGTCC
  TTGGAATTTG AAGAGCATTT GTTCCTTAAT TAGAATTTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145994744	ENSMUSSNP4521771	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51100017					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164946295 () rs orientation: forward

Symbol	Name	Function Class
Cpgi947	CpG island 947	1766 bp proximal
Gm70481	predicted gene, 70481	339 bp upstream
Rr396491	regulatory region 396491	1533 bp upstream
Rr422319	regulatory region 422319	333 bp proximal
Rr422320	regulatory region 422320	546 bp proximal
Rr422321	regulatory region 422321	1809 bp proximal