rs51100211 SNP Detail

Summary

• ID
  rs51100211
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20787580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGTAATT AGCAAACAGA
  ACCTTGGTAA AAAGATAAAA TTATCACAAT TCAGCTATAA TTTTATATAA TCTTCACAAA
  ACAGCTAAAA GCGAGATTTT ACTGTAAAAT ATATCGTGAA TTAGTGTTGA GAATTTCAAC
  TCAAATTTAG TAGTACACGA TTTTTGTTTA TAGGTCAATG TAATTGTTGA TGAAAAGGTC
  R
  CCGCCTGCTG TTTCTCAAAA GCACTATTGC TGTAGGTTAA TCTGTACCAG GAAGGTAGCC
  AAGGCTGGGA AGTCTTTGTT CAAAGGACAA TAGTCCTAGG ACTTAGGGAT CACTGTGACA
  TGCGACCAGA GCTGTGAAGG CCTTTGGGAA CACAGCACTC AGTGGCACCC ATACCTGGCT
  GTTTGTCAGA ACGAACTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61757692	NES17682717	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51100211					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61757692	NES17682717	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20787580 () rs orientation: forward

Symbol	Name	Function Class
Elmo1	engulfment and cell motility 1	within coordinates
Tssr118599	transcription start site region 118599	1984 bp upstream