rs51100224 SNP Detail

Summary

• ID
  rs51100224
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46381730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACCACG CCCGGCTCGA
  GATAGATTTT TCTATACATT TTTTTTCTTT CAACAACTAA GGAAAAGGTA GAGCTAACAC
  ATAGGAACTG GCTAAAGACT TAAGTAGTTG GTTTGTCTAG ATATTAACAT TGAGAACAAA
  ATATTACAAA GACCCCGTCT CAAACAAACA AAAGAAAAAA GTGTTAATCA CTCATTTACA
  R
  TGTTACATAG CTGAGTCCCC TATCTTTTTT TTTTTTTTTC TGAGTCCCCT ATCTTGATTG
  GGTCCTTTAC CCCTGCCCCA ACACTGGACA TCTTTGTTAT CATGACAGAG ATCACTAGTT
  GTCTATTCAC CCACTTAGCC AATAAGGTTT TATTTTGTAC ATAGTCGTAC CAGGCCTTAG
  GTACCGTGTA AAGAGAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60313007	NES15818235	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51100224					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60313007	NES15818235	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46381730 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	within coordinates
Cpgi11001	CpG island 11001	1536 bp proximal
Gm59146	predicted gene, 59146	1802 bp upstream
Rr405999	regulatory region 405999	1748 bp upstream
Rr548725	regulatory region 548725	820 bp distal
Rr548726	regulatory region 548726	1040 bp distal
Rr548727	regulatory region 548727	1312 bp proximal
Rr548728	regulatory region 548728	1813 bp proximal