rs51101858 SNP Detail

Summary

• ID
  rs51101858
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24007985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGC TTACATCTCA ACCATGCGCA
  C
  CAAATAGAGA CTGTTGCTGG ACTTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325327370	CHEV_17_23925978	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51101858					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24007985 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8694	CpG island 8694	1440 bp proximal
D930048G16Rik	RIKEN cDNA D930048G16 gene	1693 bp upstream
Gm52285	predicted gene, 52285	1191 bp downstream
Rr339283	regulatory region 339283	1984 bp distal
Rr339284	regulatory region 339284	1584 bp distal
Rr339285	regulatory region 339285	615 bp proximal
Srrm2	serine/arginine repetitive matrix 2	1521 bp upstream
Tssr142954	transcription start site region 142954	1614 bp upstream
Tssr146666	transcription start site region 146666	869 bp downstream