rs51101952 SNP Detail

Summary

• ID
  rs51101952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42863655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTCTCAC ACTGGCTCCC
  TTTGTGTCGC CCGCGTGGGG AGGGCGTGTG TGAGAGTGTG TATTGCAGGG ATGGGGGAGG
  GTAGCGCGTA GAGCCTTACA CACAACCAGT GACACCCACG CGGGCTTTCC CCTTCCAGGA
  AGAAAAGTGT CAGTGATAAC AATGACCCCC AAAATCACCC GGCGCGGGGT AGGGATGCCG
  Y
  GCGGCTGTGG GCGGAGGGAA TGACAGGGCT TCCTGGGTGA GGCTGTCGCC AGCGGGGCTA
  CTACAGGGTG GAACTTGTTG GTGACATTCA AACCGCCGGG TGGTTTTGTC TGGAGGGTGT
  CACCGCACTG ATGCGGGGAG GGGGCGGGAC TGACCTGGGA ACAGTGGTTG GAAAGCCACC
  TTGGAGGTCA AGATGCAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61781875	NES17715481	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51101952					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61781875	NES17715481	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42863655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5506	CpG island 5506	within coordinates
Phactr1	phosphatase and actin regulator 1	within coordinates
Rr478185	regulatory region 478185	588 bp distal
Rr478186	regulatory region 478186	219 bp distal
Rr478187	regulatory region 478187	1438 bp proximal
Tssr119461	transcription start site region 119461	840 bp downstream
Tssr119462	transcription start site region 119462	641 bp downstream
Tssr119463	transcription start site region 119463	440 bp downstream