GATCC TATCAAATTG ACAATAGTTA Y CATCCTAGTT TCAACGGGTG CACTT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|
ss144698573 | ENSMUSSNP2999710 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | T | C | ||
ss321719770 | CHEV_5_149769934 | CHEVERUD | SCREENING_POP | f | SNP | T | C | |||
SNP Consensus Information | ||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
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rs51102109 | SNP | C | T | C | T | C |
Location: Chr5:148895168 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
1810059H22Rik | RIKEN cDNA 1810059H22 gene | within coordinates | ||||||
Cpgi17084 | CpG island 17084 | 789 bp proximal | ||||||
Gm15406 | predicted gene 15406 | within coordinates | ||||||
Gm15409 | predicted gene 15409 | within coordinates | ||||||
Gm52833 | predicted gene, 52833 | within coordinates | ||||||
Rr111639 | regulatory region 111639 | 33 bp proximal | ||||||
Rr124806 | regulatory region 124806 | 232 bp proximal | ||||||
Rr378799 | regulatory region 378799 | 206 bp downstream | ||||||
Rr378800 | regulatory region 378800 | 1029 bp upstream | ||||||
Tssr49867 | transcription start site region 49867 | 905 bp upstream | ||||||
Tssr49868 | transcription start site region 49868 | 961 bp upstream | ||||||
Tssr49869 | transcription start site region 49869 | 1433 bp upstream | ||||||
Tssr54596 | transcription start site region 54596 | 922 bp downstream | ||||||
Tssr54597 | transcription start site region 54597 | 1096 bp downstream | ||||||
Tssr54598 | transcription start site region 54598 | 1201 bp downstream | ||||||
Tssr54599 | transcription start site region 54599 | 1617 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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