rs51104369 SNP Detail

Summary

• ID
  rs51104369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87455822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGT GCTACCCACT GAGATGCATT
  Y
  GCAGCGCTGA TTTAGAATTC AATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61664511	NES17606430	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C		T	C	C
ss137929670	ENSMUSSNP713237	ENSEMBL	ENSEMBL_Sanger	f	SNP		C									T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51104369					SNP	C	C	C	C	C	C	C	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61664511	NES17606430	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87455822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4942	CpG island 4942	742 bp distal
Gm33444	predicted gene, 33444	within coordinates
Rr258424	regulatory region 258424	1779 bp proximal
Rr268858	regulatory region 268858	1180 bp proximal
Rr387583	regulatory region 387583	1647 bp upstream