rs51105049 SNP Detail

Summary

• ID
  rs51105049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154064670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTAGCCT GGGCAGGGAT
  CTGTAAAAGA ATCTTCTGGC AGCTGCCATA TGGAGCTCAT TTCTGTGGCT GGTTCAGTTA
  GTGGAGGGCA GAGGCCTTGC AGAGTAAATG GGGTGGGGGA AGGGCGATGA GGGCGTGGCT
  AGAGAAGCAG CGCTAAGAGG GACAGGACAA GCCTCTTAGC CATGGCAATG GCCCTCTCCT
  Y
  GGGGTTGAGG TGAGAGCTTA GGTGTCACTC CTGGATACAG AGGTCATGTT CACAGGCAGG
  CTATGCTGCC TGCCGGGATC TTCCACCCAA GAGTACTTCT TGCTGAGTGG ATCTGGGCAC
  GGAATGTGGT CAGCAGACAC CCTCTGCCTG TCGGCTCTCT TCAGGGCTTG CCTCAGCTCA
  GAGAGGTGCC TCCAGGATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145757266	ENSMUSSNP5644982	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51105049					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154064670 () rs orientation: forward

Symbol	Name	Function Class
Rr420823	regulatory region 420823	within coordinates
Rr420824	regulatory region 420824	1190 bp proximal